Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BEN83_02790 | BEN83_05675 | GCA_001243975_01560 | GCA_001243975_02047 | Unannotated protein. | Unannotated protein. | 0.914 |
BEN83_02790 | ezrA | GCA_001243975_01560 | GCA_001243975_01558 | Unannotated protein. | Unannotated protein; Negative regulator of FtsZ ring formation; modulates the frequency and position of FtsZ ring formation. Inhibits FtsZ ring formation at polar sites. Interacts either with FtsZ or with one of its binding partners to promote depolymerization; Belongs to the EzrA family. | 0.587 |
BEN83_02790 | mnmA | GCA_001243975_01560 | GCA_001243975_02045 | Unannotated protein. | Unannotated protein; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34. | 0.467 |
BEN83_02790 | thiI | GCA_001243975_01560 | GCA_001243975_01561 | Unannotated protein. | Unannotated protein; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | 0.995 |
BEN83_02790 | valS | GCA_001243975_01560 | GCA_001243975_01562 | Unannotated protein. | Unannotated protein; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily. | 0.506 |
BEN83_05560 | cinA | GCA_001243975_02025 | GCA_001243975_00659 | Unannotated protein. | Unannotated protein; Belongs to the CinA family. | 0.772 |
BEN83_05560 | thiI | GCA_001243975_02025 | GCA_001243975_01561 | Unannotated protein. | Unannotated protein; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | 0.547 |
BEN83_05560 | valS | GCA_001243975_02025 | GCA_001243975_01562 | Unannotated protein. | Unannotated protein; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily. | 0.499 |
BEN83_05675 | BEN83_02790 | GCA_001243975_02047 | GCA_001243975_01560 | Unannotated protein. | Unannotated protein. | 0.914 |
BEN83_05675 | mnmA | GCA_001243975_02047 | GCA_001243975_02045 | Unannotated protein. | Unannotated protein; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34. | 0.809 |
BEN83_05675 | thiI | GCA_001243975_02047 | GCA_001243975_01561 | Unannotated protein. | Unannotated protein; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | 0.968 |
BEN83_06675 | cinA | GCA_001243975_00619 | GCA_001243975_00659 | Unannotated protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Unannotated protein; Belongs to the CinA family. | 0.597 |
BEN83_06675 | mnmA | GCA_001243975_00619 | GCA_001243975_02045 | Unannotated protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Unannotated protein; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34. | 0.553 |
BEN83_06675 | queA | GCA_001243975_00619 | GCA_001243975_00570 | Unannotated protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Unannotated protein; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA). | 0.499 |
BEN83_06675 | rny | GCA_001243975_00619 | GCA_001243975_00657 | Unannotated protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Unannotated protein; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family. | 0.490 |
BEN83_06675 | thiI | GCA_001243975_00619 | GCA_001243975_01561 | Unannotated protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Unannotated protein; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | 0.959 |
cinA | BEN83_05560 | GCA_001243975_00659 | GCA_001243975_02025 | Unannotated protein; Belongs to the CinA family. | Unannotated protein. | 0.772 |
cinA | BEN83_06675 | GCA_001243975_00659 | GCA_001243975_00619 | Unannotated protein; Belongs to the CinA family. | Unannotated protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.597 |
cinA | mnmA | GCA_001243975_00659 | GCA_001243975_02045 | Unannotated protein; Belongs to the CinA family. | Unannotated protein; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34. | 0.579 |
cinA | queA | GCA_001243975_00659 | GCA_001243975_00570 | Unannotated protein; Belongs to the CinA family. | Unannotated protein; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA). | 0.480 |
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