STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER93539.1D-proline reductase (dithiol) PrdB. (157 aa)    
Predicted Functional Partners:
SES29359.1
Proline racemase/trans-L-3-hydroxyproline dehydratase; Belongs to the proline racemase family.
 
  
 0.894
selA
L-seryl-tRNA(Ser) seleniumtransferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
  
   
 0.746
SES25856.1
Selenocysteine-specific elongation factor.
 
     0.706
SES40286.1
Putative spermidine/putrescine transport system permease protein.
 
     0.548
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP.
 
   
 0.546
SES40293.1
Putative spermidine/putrescine transport system substrate-binding protein.
 
     0.534
SER93519.1
4a-hydroxytetrahydrobiopterin dehydratase.
       0.529
SES40279.1
Putative spermidine/putrescine transport system permease protein.
 
     0.497
ribBA
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
   
    0.400
Your Current Organism:
Salipaludibacillus aurantiacus
NCBI taxonomy Id: 1601833
Other names: Bacillus sp. S12(2015), Bacillus sp. s9, KCTC 33633, LMG 28644, LMG:28644, S. aurantiacus, Salipaludibacillus aurantiacus Sultanpuram and Mothe 2016, strain S9
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