SES06334.1 protein (Salipaludibacillus aurantiacus)

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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protein homology

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[Homology]

Score

SES06334.1

TRAP-type C4-dicarboxylate transport system, small permease component. (179 aa)

Predicted Functional Partners:

SES06320.1

0.948

SES06347.1

0.898

SES07280.1

0.783

SES28065.1

0.778

SES07263.1

0.744

SES26429.1

0.724

SES06532.1

0.717

SES38168.1

0.710

SES06503.1

0.699

SES29370.1

0.694

Your Current Organism:

Salipaludibacillus aurantiacus

NCBI taxonomy Id: 1601833
Other names: Bacillus sp. S12(2015), Bacillus sp. s9, KCTC 33633, LMG 28644, LMG:28644, S. aurantiacus, Salipaludibacillus aurantiacus Sultanpuram and Mothe 2016, strain S9

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SES06320.1	SES06334.1	SAMN05518684_10775	SAMN05518684_10776	TRAP transporter, DctM subunit.	TRAP-type C4-dicarboxylate transport system, small permease component.	0.948
SES06320.1	SES06347.1	SAMN05518684_10775	SAMN05518684_10777	TRAP transporter, DctM subunit.	C4-dicarboxylate-binding protein DctP.	0.994
SES06320.1	SES06503.1	SAMN05518684_10775	SAMN05518684_10788	TRAP transporter, DctM subunit.	C4-dicarboxylate transporter, DctM subunit.	0.684
SES06320.1	SES06532.1	SAMN05518684_10775	SAMN05518684_10790	TRAP transporter, DctM subunit.	Tripartite ATP-independent transporter solute receptor, DctP family.	0.842
SES06320.1	SES07280.1	SAMN05518684_10775	SAMN05518684_107133	TRAP transporter, DctM subunit.	TRAP-type C4-dicarboxylate transport system, small permease component.	0.663
SES06334.1	SES06320.1	SAMN05518684_10776	SAMN05518684_10775	TRAP-type C4-dicarboxylate transport system, small permease component.	TRAP transporter, DctM subunit.	0.948
SES06334.1	SES06347.1	SAMN05518684_10776	SAMN05518684_10777	TRAP-type C4-dicarboxylate transport system, small permease component.	C4-dicarboxylate-binding protein DctP.	0.898
SES06334.1	SES06503.1	SAMN05518684_10776	SAMN05518684_10788	TRAP-type C4-dicarboxylate transport system, small permease component.	C4-dicarboxylate transporter, DctM subunit.	0.699
SES06334.1	SES06532.1	SAMN05518684_10776	SAMN05518684_10790	TRAP-type C4-dicarboxylate transport system, small permease component.	Tripartite ATP-independent transporter solute receptor, DctP family.	0.717
SES06334.1	SES07263.1	SAMN05518684_10776	SAMN05518684_107132	TRAP-type C4-dicarboxylate transport system, small permease component.	TRAP transporter, DctM subunit.	0.744
SES06334.1	SES07280.1	SAMN05518684_10776	SAMN05518684_107133	TRAP-type C4-dicarboxylate transport system, small permease component.	TRAP-type C4-dicarboxylate transport system, small permease component.	0.783
SES06334.1	SES26429.1	SAMN05518684_10776	SAMN05518684_11347	TRAP-type C4-dicarboxylate transport system, small permease component.	TRAP transporter, DctM subunit.	0.724
SES06334.1	SES28065.1	SAMN05518684_10776	SAMN05518684_11415	TRAP-type C4-dicarboxylate transport system, small permease component.	TRAP transporter, DctM subunit.	0.778
SES06334.1	SES29370.1	SAMN05518684_10776	SAMN05518684_114106	TRAP-type C4-dicarboxylate transport system, small permease component.	C4-dicarboxylate transporter, DctM subunit.	0.694
SES06334.1	SES38168.1	SAMN05518684_10776	SAMN05518684_12086	TRAP-type C4-dicarboxylate transport system, small permease component.	TRAP transporter, DctM subunit.	0.710
SES06347.1	SES06320.1	SAMN05518684_10777	SAMN05518684_10775	C4-dicarboxylate-binding protein DctP.	TRAP transporter, DctM subunit.	0.994
SES06347.1	SES06334.1	SAMN05518684_10777	SAMN05518684_10776	C4-dicarboxylate-binding protein DctP.	TRAP-type C4-dicarboxylate transport system, small permease component.	0.898
SES06347.1	SES06503.1	SAMN05518684_10777	SAMN05518684_10788	C4-dicarboxylate-binding protein DctP.	C4-dicarboxylate transporter, DctM subunit.	0.952
SES06347.1	SES07263.1	SAMN05518684_10777	SAMN05518684_107132	C4-dicarboxylate-binding protein DctP.	TRAP transporter, DctM subunit.	0.885
SES06347.1	SES07280.1	SAMN05518684_10777	SAMN05518684_107133	C4-dicarboxylate-binding protein DctP.	TRAP-type C4-dicarboxylate transport system, small permease component.	0.623

page 1 of 4

Network Stats

number of nodes:

11

number of edges:

35

average node degree:

6.36

avg. local clustering coefficient:

0.837

expected number of edges:

15

PPI enrichment p-value:

9.99e-06

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0022900

Electron transport chain

8 of 50

1.58

2.71

5.27e-09

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005506

Iron ion binding

5 of 18

1.82

2.45

2.53e-06

GO:0009055

Electron transfer activity

5 of 26

1.66

2.07

9.43e-06

GO:0008137

NADH dehydrogenase (ubiquinone) activity

3 of 8

1.95

1.61

0.00059

GO:0051536

Iron-sulfur cluster binding

8 of 111

1.24

1.56

1.06e-06

GO:0008901

Ferredoxin hydrogenase activity

2 of 2

2.38

1.36

0.0030

(more ...)

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0045272

Plasma membrane respiratory chain complex I

2 of 2

2.38

1.12

0.0088

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:1644

Mixed, incl. Rubredoxin, and 3Fe-4S ferredoxin

5 of 5

2.38

3.66

6.26e-08

CL:980

Oxidative phosphorylation

5 of 17

1.85

2.51

2.13e-06

CL:983

Iron hydrogenase, and Respirasome

4 of 8

2.08

2.43

1.15e-05

CL:940

Mixed, incl. Citrate cycle (TCA cycle), and Oxidative phosphorylation

6 of 73

1.3

1.45

2.80e-05

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00190

Oxidative phosphorylation

5 of 30

1.6

1.94

1.38e-05

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0045271

Respiratory chain complex I

4 of 8

2.08

2.35

1.71e-05

GOCC:0045272

Plasma membrane respiratory chain complex I

2 of 6

1.9

0.97

0.0135

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0408

Iron

4 of 45

1.33

0.93

0.0057

KW-0411

Iron-sulfur

3 of 35

1.31

0.65

0.0379

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF01257

Thioredoxin-like [2Fe-2S] ferredoxin

3 of 3

2.38

1.88

0.00029

PF00037

4Fe-4S binding domain

4 of 16

1.78

1.65

0.00029

PF13510

2Fe-2S iron-sulfur cluster binding domain

2 of 2

2.38

1.04

0.0121

PF02906

Iron only hydrogenase large subunit, C-terminal domain

2 of 5

1.98

0.8

0.0315

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR017896

4Fe-4S ferredoxin-type, iron-sulphur binding domain

6 of 34

1.63

2.13

3.71e-06

IPR017900

4Fe-4S ferredoxin, iron-sulphur binding, conserved site

5 of 30

1.6

1.73

6.90e-05

IPR036249

Thioredoxin-like superfamily

3 of 12

1.78

1.04

0.0083

IPR036991

Iron hydrogenase, small subunit superfamily

2 of 2

2.38

0.88

0.0248

IPR036010

2Fe-2S ferredoxin-like superfamily

2 of 2

2.38

0.88

0.0248

(more ...)

Protein Domains (SMART)

domain

description

count in network

strength

signal

false discovery rate

SM00929

NADH-ubiquinone oxidoreductase-G iron-sulfur binding region

2 of 2

2.38

1.11

0.0092

SM00902

Iron hydrogenase small subunit

2 of 2

2.38

1.11

0.0092

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