STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADZ06282.1Regulatory protein; COG2207 AraC-type DNA-binding domain-containing proteins. (315 aa)    
Predicted Functional Partners:
ADZ07711.1
Msm operon regulatory protein; COG2207 AraC-type DNA-binding domain-containing proteins.
 
 
 0.682
ADZ06419.1
Transcriptional regulator raffinose operon; COG2207 AraC-type DNA-binding domain-containing proteins.
  
     0.593
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.521
ADZ07323.1
Transcriptional regulator, XRE family protein; COG1396 Predicted transcriptional regulators.
 
  
 0.492
ADZ07888.1
COG0846 NAD-dependent protein deacetylases, SIR2 family.
 
  
 0.467
ADZ06279.1
Proline iminopeptidase; Releases the N-terminal proline from various substrates. Belongs to the peptidase S33 family.
  
  
 0.463
ADZ06280.1
COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters.
       0.452
ADZ06281.1
ABC transporter ATP-binding protein; COG1122 ABC-type cobalt transport system, ATPase component.
       0.452
ADZ07875.1
Hypothetical protein.
  
     0.441
ADZ06228.1
Esterase; COG2755 Lysophospholipase L1 and related esterases.
 
    0.409
Your Current Organism:
Lactobacillus amylovorus
NCBI taxonomy Id: 1604
Other names: ATCC 33620, CCUG 27201, CIP 102989, DSM 16698 [[Lactobacillus sobrius]], DSM 20531, L. amylovorus, LMG 9496, LMG:9496, Lactobacillus acidophilus group A3, Lactobacillus sobrius, Lactobacillus sobrius Konstantinov et al. 2006, NCAIM B.01458, NCCB 100067 [[Lactobacillus sobrius]], NRRL B-4540, strain OTU171-001 [[Lactobacillus sobrius]]
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