STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADZ06463.1Putative transposon excisionase. (66 aa)    
Predicted Functional Partners:
ADZ06464.1
Integrase family protein; COG0582 Integrase; Belongs to the 'phage' integrase family.
 
     0.902
ADZ06462.1
Hypothetical protein.
       0.734
ADZ08019.1
COG0480 Translation elongation factors (GTPases).
  
     0.458
ADZ06461.1
Hypothetical protein.
       0.446
ADZ07984.1
Hypothetical protein; COG3505 Type IV secretory pathway, VirD4 components.
  
     0.442
ADZ06459.1
Hypothetical protein.
       0.419
ADZ06460.1
COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins.
       0.419
Your Current Organism:
Lactobacillus amylovorus
NCBI taxonomy Id: 1604
Other names: ATCC 33620, CCUG 27201, CIP 102989, DSM 16698 [[Lactobacillus sobrius]], DSM 20531, L. amylovorus, LMG 9496, LMG:9496, Lactobacillus acidophilus group A3, Lactobacillus sobrius, Lactobacillus sobrius Konstantinov et al. 2006, NCAIM B.01458, NCCB 100067 [[Lactobacillus sobrius]], NRRL B-4540, strain OTU171-001 [[Lactobacillus sobrius]]
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