STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADZ06586.1Bacteriocin helveticin J. (272 aa)    
Predicted Functional Partners:
ADZ06585.1
Bacteriocin helveticin J.
       0.773
ADZ07606.1
V-type sodium ATP synthase subunit.
  
     0.769
ADZ06587.1
Hypothetical protein.
       0.741
ADZ07875.1
Hypothetical protein.
  
     0.739
ADZ07693.1
COG1765 Predicted redox protein, regulator of disulfide bond formation.
  
     0.725
ADZ06396.1
Hypothetical protein.
  
     0.709
ADZ06965.1
COG2891 Cell shape-determining protein.
  
     0.686
ADZ06584.1
COG1396 Predicted transcriptional regulators.
 
     0.649
ADZ07361.1
3',5'-cyclic-nucleotide phosphodiesterase; COG1409 Predicted phosphohydrolases.
  
     0.602
ADZ06591.1
Hypothetical protein.
 
     0.553
Your Current Organism:
Lactobacillus amylovorus
NCBI taxonomy Id: 1604
Other names: ATCC 33620, CCUG 27201, CIP 102989, DSM 16698 [[Lactobacillus sobrius]], DSM 20531, L. amylovorus, LMG 9496, LMG:9496, Lactobacillus acidophilus group A3, Lactobacillus sobrius, Lactobacillus sobrius Konstantinov et al. 2006, NCAIM B.01458, NCCB 100067 [[Lactobacillus sobrius]], NRRL B-4540, strain OTU171-001 [[Lactobacillus sobrius]]
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