STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADZ06638.1Mutator protein; COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes. (140 aa)    
Predicted Functional Partners:
ADZ06639.1
Phage related helicase; COG3886 Predicted HKD family nuclease.
 
    0.960
ADZ06244.1
Phage DEAD box family helicase; COG3886 Predicted HKD family nuclease.
 
    0.817
ADZ06442.1
ATP-dependent RNA helicase-like protein; COG0513 Superfamily II DNA and RNA helicases; Belongs to the DEAD box helicase family.
  
 0.592
ADZ06608.1
RNA helicase; COG0513 Superfamily II DNA and RNA helicases.
  
 0.592
ADZ06791.1
ATP-dependent RNA helicase, DEAD-DEAH box; COG0513 Superfamily II DNA and RNA helicases.
  
 0.592
rnr
Exoribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.
   
 0.565
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
   
 
 0.508
ADZ07848.1
COG0331 (acyl-carrier-protein) S-malonyltransferase.
  
   0.460
ADZ06833.1
Protease; COG0612 Predicted Zn-dependent peptidases.
   
   0.435
ADZ06834.1
Protease; COG0612 Predicted Zn-dependent peptidases.
   
   0.435
Your Current Organism:
Lactobacillus amylovorus
NCBI taxonomy Id: 1604
Other names: ATCC 33620, CCUG 27201, CIP 102989, DSM 16698 [[Lactobacillus sobrius]], DSM 20531, L. amylovorus, LMG 9496, LMG:9496, Lactobacillus acidophilus group A3, Lactobacillus sobrius, Lactobacillus sobrius Konstantinov et al. 2006, NCAIM B.01458, NCCB 100067 [[Lactobacillus sobrius]], NRRL B-4540, strain OTU171-001 [[Lactobacillus sobrius]]
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