STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADZ06827.1COG0474 Cation transport ATPase. (918 aa)    
Predicted Functional Partners:
ADZ06828.1
PTS system, glucitol/sorbitol-specific IIA component; COG3731 Phosphotransferase system sorbitol-specific component IIA.
       0.553
ADZ06829.1
Permease; COG0628 Predicted permease.
  
    0.553
ADZ06826.1
Isomerase; COG2706 3-carboxymuconate cyclase.
       0.524
ADZ06364.1
Na+-H+ antiporter; COG0475 Kef-type K+ transport systems, membrane components.
  
 
 0.460
ADZ06835.1
3-oxoacyl-(acyl-carrier protein) reductase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
   
 
 0.460
ADZ06833.1
Protease; COG0612 Predicted Zn-dependent peptidases.
  
  
 0.438
ADZ06834.1
Protease; COG0612 Predicted Zn-dependent peptidases.
  
  
 0.438
ADZ06830.1
RNA methyltransferase, TrmH family, group 2; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily.
       0.437
ADZ06831.1
COG4835 Uncharacterized protein conserved in bacteria.
       0.423
ADZ06825.1
Hypothetical protein.
   
   0.416
Your Current Organism:
Lactobacillus amylovorus
NCBI taxonomy Id: 1604
Other names: ATCC 33620, CCUG 27201, CIP 102989, DSM 16698 [[Lactobacillus sobrius]], DSM 20531, L. amylovorus, LMG 9496, LMG:9496, Lactobacillus acidophilus group A3, Lactobacillus sobrius, Lactobacillus sobrius Konstantinov et al. 2006, NCAIM B.01458, NCCB 100067 [[Lactobacillus sobrius]], NRRL B-4540, strain OTU171-001 [[Lactobacillus sobrius]]
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