STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADZ06843.1Competence protein; COG1040 Predicted amidophosphoribosyltransferases. (231 aa)    
Predicted Functional Partners:
ADZ06842.1
COMF operon protein 1; COG4098 Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein).
 
  
 0.965
ADZ07007.1
Competence protein ComEC; COG0658 Predicted membrane metal-binding protein.
 
  
 0.819
ADZ06841.1
Hypothetical protein.
  
    0.774
raiA
Phosphate starvation inducible protein stress related protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
  
    0.771
ADZ06907.1
Competence protein; COG1459 Type II secretory pathway, component PulF.
 
  
 0.732
ADZ06962.1
COG2003 DNA repair proteins.
  
    0.676
dprA
DNA processing protein chain A; COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake.
  
 
 0.666
ADZ07006.1
Competence protein ComEA; COG1555 DNA uptake protein and related DNA-binding proteins.
  
  
 0.657
nagA
COG1820 N-acetylglucosamine-6-phosphate deacetylase.
  
    0.583
secA
Preprotein translocase subunit SecA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane.
       0.568
Your Current Organism:
Lactobacillus amylovorus
NCBI taxonomy Id: 1604
Other names: ATCC 33620, CCUG 27201, CIP 102989, DSM 16698 [[Lactobacillus sobrius]], DSM 20531, L. amylovorus, LMG 9496, LMG:9496, Lactobacillus acidophilus group A3, Lactobacillus sobrius, Lactobacillus sobrius Konstantinov et al. 2006, NCAIM B.01458, NCCB 100067 [[Lactobacillus sobrius]], NRRL B-4540, strain OTU171-001 [[Lactobacillus sobrius]]
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