Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADZ06843.1Competence protein; COG1040 Predicted amidophosphoribosyltransferases. (231 aa)    
Predicted Functional Partners:
ADZ06842.1
COMF operon protein 1; COG4098 Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein).
 
  
 0.978
ADZ07007.1
Competence protein ComEC; COG0658 Predicted membrane metal-binding protein.
 
  
 0.867
dprA
DNA processing protein chain A; COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake.
  
 
 0.818
ADZ06907.1
Competence protein; COG1459 Type II secretory pathway, component PulF.
 
  
 0.741
raiA
Phosphate starvation inducible protein stress related protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
  
    0.735
ADZ06841.1
Hypothetical protein.
       0.725
ADZ06818.1
COG4469 Competence protein.
  
  
 0.676
ADZ07006.1
Competence protein ComEA; COG1555 DNA uptake protein and related DNA-binding proteins.
  
  
 0.665
nagA
COG1820 N-acetylglucosamine-6-phosphate deacetylase.
  
    0.632
xpt
Xanthine phosphoribosyltransferase; Converts the preformed base xanthine, a product of nucleic acid breakdown, to xanthosine 5'-monophosphate (XMP), so it can be reused for RNA or DNA synthesis.
   
  
 0.579
Your Current Organism:
Lactobacillus amylovorus
NCBI taxonomy Id: 1604
Other names: ATCC 33620, CCUG 27201, CIP 102989, DSM 16698 [[Lactobacillus sobrius]], DSM 20531, L. amylovorus, LMG 9496, LMG:9496, Lactobacillus acidophilus group A3, Lactobacillus sobrius, Lactobacillus sobrius Konstantinov et al. 2006, NCAIM B.01458, NCCB 100067 [[Lactobacillus sobrius]], NRRL B-4540, strain OTU171-001 [[Lactobacillus sobrius]]
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