STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADZ06964.1Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape. (283 aa)    
Predicted Functional Partners:
ADZ06963.1
Rod shape-determining protein MreB; COG1077 Actin-like ATPase involved in cell morphogenesis.
 
 
 0.976
ADZ06941.1
Rod shape-determining protein MreB; COG1077 Actin-like ATPase involved in cell morphogenesis.
 
 
 0.891
ADZ06962.1
COG2003 DNA repair proteins.
  
  
 0.890
ADZ07739.1
COG0768 Cell division protein FtsI/penicillin-binding protein 2.
 
 
 0.831
ADZ06971.1
COG0768 Cell division protein FtsI/penicillin-binding protein 2.
 
 
 0.820
ADZ06965.1
COG2891 Cell shape-determining protein.
       0.795
ADZ06944.1
COG0772 Bacterial cell division membrane protein; Belongs to the SEDS family.
 
  
 0.696
ADZ06836.1
Transcriptional regulator; COG1426 Uncharacterized protein conserved in bacteria.
 
 
 
 0.638
murC
UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
 
  
 0.616
ADZ06960.1
COG0285 Folylpolyglutamate synthase; Belongs to the folylpolyglutamate synthase family.
       0.577
Your Current Organism:
Lactobacillus amylovorus
NCBI taxonomy Id: 1604
Other names: ATCC 33620, CCUG 27201, CIP 102989, DSM 16698 [[Lactobacillus sobrius]], DSM 20531, L. amylovorus, LMG 9496, LMG:9496, Lactobacillus acidophilus group A3, Lactobacillus sobrius, Lactobacillus sobrius Konstantinov et al. 2006, NCAIM B.01458, NCCB 100067 [[Lactobacillus sobrius]], NRRL B-4540, strain OTU171-001 [[Lactobacillus sobrius]]
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