STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADZ07007.1Competence protein ComEC; COG0658 Predicted membrane metal-binding protein. (761 aa)    
Predicted Functional Partners:
ADZ07006.1
Competence protein ComEA; COG1555 DNA uptake protein and related DNA-binding proteins.
 
  
 0.966
ADZ07008.1
COG1466 DNA polymerase III, delta subunit.
 
   
 0.942
ADZ06907.1
Competence protein; COG1459 Type II secretory pathway, component PulF.
 
  
 0.837
dprA
DNA processing protein chain A; COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake.
  
  
 0.824
ADZ06843.1
Competence protein; COG1040 Predicted amidophosphoribosyltransferases.
 
  
 0.819
ADZ07508.1
COG0608 Single-stranded DNA-specific exonuclease.
     
 0.814
ADZ06906.1
Competence protein; COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.
 
  
 0.808
ADZ06470.1
COG1989 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases.
 
  
 0.795
ADZ07001.1
COG0772 Bacterial cell division membrane protein; Belongs to the SEDS family.
  
  
 0.792
ADZ07002.1
COG4471 Uncharacterized protein conserved in bacteria.
       0.788
Your Current Organism:
Lactobacillus amylovorus
NCBI taxonomy Id: 1604
Other names: ATCC 33620, CCUG 27201, CIP 102989, DSM 16698 [[Lactobacillus sobrius]], DSM 20531, L. amylovorus, LMG 9496, LMG:9496, Lactobacillus acidophilus group A3, Lactobacillus sobrius, Lactobacillus sobrius Konstantinov et al. 2006, NCAIM B.01458, NCCB 100067 [[Lactobacillus sobrius]], NRRL B-4540, strain OTU171-001 [[Lactobacillus sobrius]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.