STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADZ07225.1COG2820 Uridine phosphorylase. (253 aa)    
Predicted Functional Partners:
ADZ07226.1
Hypothetical protein.
       0.757
ADZ07222.1
COG0295 Cytidine deaminase.
  
  
 0.756
ADZ07227.1
Hypothetical protein; COG2334 Putative homoserine kinase type II (protein kinase fold).
 
     0.734
ADZ07223.1
COG2820 Uridine phosphorylase.
 
    
0.593
ADZ07224.1
Hypothetical protein; COG1051 ADP-ribose pyrophosphatase.
       0.579
ADZ07330.1
COG0295 Cytidine deaminase.
  
  
 0.481
ADZ07228.1
Pyrophosphatase.
       0.454
ADZ07229.1
Hypothetical protein.
       0.454
Your Current Organism:
Lactobacillus amylovorus
NCBI taxonomy Id: 1604
Other names: ATCC 33620, CCUG 27201, CIP 102989, DSM 16698 [[Lactobacillus sobrius]], DSM 20531, L. amylovorus, LMG 9496, LMG:9496, Lactobacillus acidophilus group A3, Lactobacillus sobrius, Lactobacillus sobrius Konstantinov et al. 2006, NCAIM B.01458, NCCB 100067 [[Lactobacillus sobrius]], NRRL B-4540, strain OTU171-001 [[Lactobacillus sobrius]]
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