STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADZ07368.1Initiation of chromosome replication protein; COG3935 Putative primosome component and related proteins. (227 aa)    
Predicted Functional Partners:
nth
Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.
  
  
 0.954
dinG
ATP-dependent DNA helicase; 3'-5' exonuclease.
 
  
 0.875
ADZ07772.1
Primosomal protein DnaI; COG1484 DNA replication protein.
 
  
 0.815
asnC
COG0017 Aspartyl/asparaginyl-tRNA synthetases.
  
    0.811
ADZ07370.1
COG5353 Uncharacterized protein conserved in bacteria.
 
     0.775
yabA
DNA replication initiation control protein YabA; Involved in initiation control of chromosome replication. Belongs to the YabA family.
  
     0.744
rexB
ATP-dependent exonuclease subunit B; ATP-dependent DNA helicase.
 
     0.714
ADZ07773.1
COG3611 Replication initiation/membrane attachment protein.
 
   
 0.701
ADZ06633.1
Hypothetical cytosolic protein; COG4470 Uncharacterized protein conserved in bacteria.
 
     0.650
addA
ATP-dependent helicase/nuclease subunit A; ATP-dependent DNA helicase.
 
    0.641
Your Current Organism:
Lactobacillus amylovorus
NCBI taxonomy Id: 1604
Other names: ATCC 33620, CCUG 27201, CIP 102989, DSM 16698 [[Lactobacillus sobrius]], DSM 20531, L. amylovorus, LMG 9496, LMG:9496, Lactobacillus acidophilus group A3, Lactobacillus sobrius, Lactobacillus sobrius Konstantinov et al. 2006, NCAIM B.01458, NCCB 100067 [[Lactobacillus sobrius]], NRRL B-4540, strain OTU171-001 [[Lactobacillus sobrius]]
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