STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arcACOG2235 Arginine deiminase. (423 aa)    
Predicted Functional Partners:
argF
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.
 
 0.999
arcC
Putative amino acid kinase; COG0549 Carbamate kinase; Belongs to the carbamate kinase family.
 
  
 0.993
ADZ07498.1
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
       0.563
ADZ07303.1
COG2910 Putative NADH-flavin reductase.
   
    0.474
ADZ06313.1
Oxidoreductase; COG0702 Predicted nucleoside-diphosphate-sugar epimerases.
   
    0.445
ADZ07678.1
Oxidoreductase; COG0702 Predicted nucleoside-diphosphate-sugar epimerases.
   
    0.445
ADZ07499.1
COG0474 Cation transport ATPase.
       0.416
ADZ07239.1
C4-dicarboxylate anaerobic carrier dcuC; COG1288 Predicted membrane protein.
 
   
 0.412
argS
COG0018 Arginyl-tRNA synthetase.
     
 0.409
Your Current Organism:
Lactobacillus amylovorus
NCBI taxonomy Id: 1604
Other names: ATCC 33620, CCUG 27201, CIP 102989, DSM 16698 [[Lactobacillus sobrius]], DSM 20531, L. amylovorus, LMG 9496, LMG:9496, Lactobacillus acidophilus group A3, Lactobacillus sobrius, Lactobacillus sobrius Konstantinov et al. 2006, NCAIM B.01458, NCCB 100067 [[Lactobacillus sobrius]], NRRL B-4540, strain OTU171-001 [[Lactobacillus sobrius]]
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