STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADZ07664.1Hypothetical protein; COG2151 Predicted metal-sulfur cluster biosynthetic enzyme. (107 aa)    
Predicted Functional Partners:
sdaAA
L-serine dehydratase alpha subunit; COG1760 L-serine deaminase; Belongs to the iron-sulfur dependent L-serine dehydratase family.
       0.784
ADZ07662.1
L-serine dehydratase, beta subunit; COG1760 L-serine deaminase.
       0.752
ADZ07665.1
Hypothetical protein.
       0.737
ADZ07407.1
NifU family SUF system FeS assembly protein; COG0822 NifU homolog involved in Fe-S cluster formation.
  
    0.508
ADZ07661.1
Hypothetical protein.
       0.468
ADZ07410.1
ABC transporter ATPase component; COG0396 ABC-type transport system involved in Fe-S cluster assembly, ATPase component.
 
  
 0.420
Your Current Organism:
Lactobacillus amylovorus
NCBI taxonomy Id: 1604
Other names: ATCC 33620, CCUG 27201, CIP 102989, DSM 16698 [[Lactobacillus sobrius]], DSM 20531, L. amylovorus, LMG 9496, LMG:9496, Lactobacillus acidophilus group A3, Lactobacillus sobrius, Lactobacillus sobrius Konstantinov et al. 2006, NCAIM B.01458, NCCB 100067 [[Lactobacillus sobrius]], NRRL B-4540, strain OTU171-001 [[Lactobacillus sobrius]]
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