Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADZ07711.1Msm operon regulatory protein; COG2207 AraC-type DNA-binding domain-containing proteins. (277 aa)    
Predicted Functional Partners:
ADZ06657.1
Bifunctional acetaldehyde-CoA/alcohol dehydrogenase; COG1012 NAD-dependent aldehyde dehydrogenases; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
  
 0.824
ADZ07710.1
Sugar ABC transporter, sugar-binding protein; COG1653 ABC-type sugar transport system, periplasmic component.
 
  
 0.813
rpoD
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.702
ADZ06282.1
Regulatory protein; COG2207 AraC-type DNA-binding domain-containing proteins.
 
 
 0.667
ADZ07708.1
COG0395 ABC-type sugar transport system, permease component.
 
  
 0.664
ADZ07717.1
Transcriptional regulator, gntR family protein; COG2188 Transcriptional regulators.
 
  
 0.662
ADZ07709.1
COG1175 ABC-type sugar transport systems, permease components.
 
  
 0.658
ADZ07706.1
COG3345 Alpha-galactosidase.
 
   
 0.631
gtfA
Sucrose phosphorylase; COG0366 Glycosidases.
 
   
 0.615
ADZ06303.1
COG0846 NAD-dependent protein deacetylases, SIR2 family.
  
    0.556
Your Current Organism:
Lactobacillus amylovorus
NCBI taxonomy Id: 1604
Other names: ATCC 33620, CCUG 27201, CIP 102989, DSM 16698 [[Lactobacillus sobrius]], DSM 20531, L. amylovorus, LMG 9496, LMG:9496, Lactobacillus acidophilus group A3, Lactobacillus sobrius, Lactobacillus sobrius Konstantinov et al. 2006, NCAIM B.01458, NCCB 100067 [[Lactobacillus sobrius]], NRRL B-4540, strain OTU171-001 [[Lactobacillus sobrius]]
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