STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADZ07717.1Transcriptional regulator, gntR family protein; COG2188 Transcriptional regulators. (238 aa)    
Predicted Functional Partners:
ADZ07711.1
Msm operon regulatory protein; COG2207 AraC-type DNA-binding domain-containing proteins.
 
  
 0.612
ADZ06583.1
PTS system, sucrose-specific IIABC component; COG1264 Phosphotransferase system IIB components.
  
  
 0.570
ADZ06629.1
Catabolite control protein A; COG1609 Transcriptional regulators.
 
   
 0.557
ADZ07390.1
COG1725 Predicted transcriptional regulators.
 
  
 0.533
ADZ07716.1
PTS betaglucoside-specific enzyme IIC component, putative; COG1455 Phosphotransferase system cellobiose-specific component IIC.
  
    0.522
ADZ07721.1
Transcription repressor of beta-galactosidase gene; COG1609 Transcriptional regulators.
 
   
 0.491
ADZ08131.1
COG1609 Transcriptional regulators.
 
   
 0.486
ADZ07718.1
COG0778 Nitroreductase.
  
    0.477
ADZ07715.1
Amidohydrolase; COG1228 Imidazolonepropionase and related amidohydrolases.
  
  
 0.454
ADZ07856.1
Hypothetical protein; COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain.
  
    0.431
Your Current Organism:
Lactobacillus amylovorus
NCBI taxonomy Id: 1604
Other names: ATCC 33620, CCUG 27201, CIP 102989, DSM 16698 [[Lactobacillus sobrius]], DSM 20531, L. amylovorus, LMG 9496, LMG:9496, Lactobacillus acidophilus group A3, Lactobacillus sobrius, Lactobacillus sobrius Konstantinov et al. 2006, NCAIM B.01458, NCCB 100067 [[Lactobacillus sobrius]], NRRL B-4540, strain OTU171-001 [[Lactobacillus sobrius]]
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