STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADZ07816.1DNA repair ATPase. (831 aa)    
Predicted Functional Partners:
ADZ07817.1
Phosphoesterase; COG0420 DNA repair exonuclease.
 
 
 0.976
ADZ07815.1
CMP-binding factor; COG3481 Predicted HD-superfamily hydrolase.
  
    0.872
ADZ07818.1
Hypothetical protein; Belongs to the UPF0342 family.
       0.866
ADZ07819.1
Penicillin-binding protein 2A; COG0744 Membrane carboxypeptidase (penicillin-binding protein).
       0.847
rexB
ATP-dependent exonuclease subunit B; ATP-dependent DNA helicase.
 
   
 0.707
ADZ07875.1
Hypothetical protein.
  
     0.692
ADZ06316.1
COG1309 Transcriptional regulator.
  
     0.678
ADZ07878.1
COG2367 Beta-lactamase class A.
 
     0.677
ADZ06414.1
Hypothetical protein.
  
     0.676
ADZ07773.1
COG3611 Replication initiation/membrane attachment protein.
  
     0.627
Your Current Organism:
Lactobacillus amylovorus
NCBI taxonomy Id: 1604
Other names: ATCC 33620, CCUG 27201, CIP 102989, DSM 16698 [[Lactobacillus sobrius]], DSM 20531, L. amylovorus, LMG 9496, LMG:9496, Lactobacillus acidophilus group A3, Lactobacillus sobrius, Lactobacillus sobrius Konstantinov et al. 2006, NCAIM B.01458, NCCB 100067 [[Lactobacillus sobrius]], NRRL B-4540, strain OTU171-001 [[Lactobacillus sobrius]]
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