STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADZ07874.1Surface protein. (359 aa)    
Predicted Functional Partners:
ADZ07982.1
Hypothetical protein; COG1357 Uncharacterized low-complexity proteins.
 
 
0.803
ADZ06697.1
Hypothetical protein.
  
 
 0.776
ADZ06699.1
Hypothetical protein.
  
 
 0.776
ADZ06700.1
Hypothetical protein.
  
 
 0.776
ADZ07121.1
N-acetylmuramidase; COG1388 FOG: LysM repeat.
 
 
 0.667
ADZ07891.1
Mucus binding protein precursor Mub.
 
 
 0.623
ADZ08186.1
ABC transporter ATP binding protein; COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
  
 
 0.586
ADZ06239.1
Hypothetical protein.
  
  
 0.577
rpsD
30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
  
 
 0.576
rpsF
30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
  
   0.571
Your Current Organism:
Lactobacillus amylovorus
NCBI taxonomy Id: 1604
Other names: ATCC 33620, CCUG 27201, CIP 102989, DSM 16698 [[Lactobacillus sobrius]], DSM 20531, L. amylovorus, LMG 9496, LMG:9496, Lactobacillus acidophilus group A3, Lactobacillus sobrius, Lactobacillus sobrius Konstantinov et al. 2006, NCAIM B.01458, NCCB 100067 [[Lactobacillus sobrius]], NRRL B-4540, strain OTU171-001 [[Lactobacillus sobrius]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.