STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADZ07885.1COG4690 Dipeptidase. (475 aa)    
Predicted Functional Partners:
ADZ07886.1
DNA nuclease.
       0.658
ADZ07887.1
COG2176 DNA polymerase III, alpha subunit (gram-positive type).
       0.654
ADZ07888.1
COG0846 NAD-dependent protein deacetylases, SIR2 family.
       0.654
ADZ07889.1
COG2323 Predicted membrane protein.
       0.614
ADZ07890.1
Hypothetical protein.
       0.613
ADZ07891.1
Mucus binding protein precursor Mub.
     
 0.463
ADZ06241.1
COG1052 Lactate dehydrogenase and related dehydrogenases; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
   
    0.422
ADZ07881.1
Hypothetical protein; COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily.
       0.412
ADZ07882.1
COG0395 ABC-type sugar transport system, permease component.
       0.412
ADZ07883.1
COG1175 ABC-type sugar transport systems, permease components.
       0.412
Your Current Organism:
Lactobacillus amylovorus
NCBI taxonomy Id: 1604
Other names: ATCC 33620, CCUG 27201, CIP 102989, DSM 16698 [[Lactobacillus sobrius]], DSM 20531, L. amylovorus, LMG 9496, LMG:9496, Lactobacillus acidophilus group A3, Lactobacillus sobrius, Lactobacillus sobrius Konstantinov et al. 2006, NCAIM B.01458, NCCB 100067 [[Lactobacillus sobrius]], NRRL B-4540, strain OTU171-001 [[Lactobacillus sobrius]]
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