STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIQ78994.1Permease of the drug/metabolite transporter (DMT) superfamily. (313 aa)    
Predicted Functional Partners:
murB
UDP-N-acetylmuramate dehydrogenase; Cell wall formation.
       0.824
pyrD
Dihydroorotate oxidase A; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.
       0.824
SIQ79135.1
Aldehyde dehydrogenase (NAD+); Belongs to the aldehyde dehydrogenase family.
       0.797
SIQ78951.1
Hypothetical protein.
  
    0.590
SIQ79333.1
PhoH-like ATPase.
  
    0.542
SIQ79194.1
Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase.
  
    0.466
SIQ79234.1
Uncharacterized membrane protein YoaK, UPF0700 family.
       0.455
SIQ79287.1
Ribosomal-protein-serine acetyltransferase.
  
    0.452
folE2
GTP cyclohydrolase I; Converts GTP to 7,8-dihydroneopterin triphosphate.
  
    0.404
Your Current Organism:
Lysobacter tolerans
NCBI taxonomy Id: 1604334
Other names: DSM 28473, KCTC 42936, L. tolerans, Luteimonas sp. UM1, Luteimonas tolerans, Luteimonas tolerans Rani et al. 2016, Lysobacter tolerans (Rani et al. 2016) Margesin et al. 2018, MCC 2572, strain UM1
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