Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OJG44265.1Hypothetical protein. (488 aa)    
Predicted Functional Partners:
OJG44264.1
Hypothetical protein.
      
0.749
OJG42626.1
Hypothetical protein.
 
     0.603
OJG43903.1
Hypothetical protein.
  
     0.567
OJG42778.1
Hypothetical protein.
   
    0.521
OJG43883.1
Hypothetical protein.
 
   
 0.500
OJG38372.1
Hypothetical protein.
  
     0.492
OJG42043.1
Hypothetical protein.
  
     0.428
OJG41497.1
Hypothetical protein.
  
    0.417
OJG44261.1
Membrane protein.
 
     0.416
OJG43762.1
Efflux ABC transporter permease.
  
     0.409
Your Current Organism:
Enterococcus gilvus
NCBI taxonomy Id: 160453
Other names: ATCC BAA-350, CCUG 45553, E. gilvus, Enterococcus gilvus Tyrrell et al. 2002, NBRC 100696, strain PQ1
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