Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
OJG40729.1 | OJG41709.1 | RV02_GL001813 | RV02_GL000756 | Hypothetical protein. | Acyltransferase. | 0.548 |
OJG40729.1 | OJG42289.1 | RV02_GL001813 | RV02_GL003773 | Hypothetical protein. | Hypothetical protein. | 0.437 |
OJG40729.1 | OJG44755.1 | RV02_GL001813 | RV02_GL000361 | Hypothetical protein. | Hypothetical protein. | 0.657 |
OJG40729.1 | rnpA | RV02_GL001813 | RV02_GL001012 | Hypothetical protein. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.564 |
OJG41709.1 | OJG40729.1 | RV02_GL000756 | RV02_GL001813 | Acyltransferase. | Hypothetical protein. | 0.548 |
OJG42289.1 | OJG40729.1 | RV02_GL003773 | RV02_GL001813 | Hypothetical protein. | Hypothetical protein. | 0.437 |
OJG44755.1 | OJG40729.1 | RV02_GL000361 | RV02_GL001813 | Hypothetical protein. | Hypothetical protein. | 0.657 |
rnpA | OJG40729.1 | RV02_GL001012 | RV02_GL001813 | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | Hypothetical protein. | 0.564 |