OJG40349.1 protein (Enterococcus gilvus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

OJG40349.1

Phi13 family phage major tail protein. (201 aa)

Predicted Functional Partners:

OJG40350.1

0.804

OJG40351.1

0.787

OJG41046.1

0.781

OJG38027.1

0.728

OJG40348.1

0.725

OJG40346.1

0.713

OJG41049.1

0.709

OJG40352.1

0.646

OJG40353.1

0.646

OJG40899.1

0.621

Your Current Organism:

Enterococcus gilvus

NCBI taxonomy Id: 160453
Other names: ATCC BAA-350, CCUG 45553, E. gilvus, Enterococcus gilvus Tyrrell et al. 2002, NBRC 100696, strain PQ1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OJG38027.1	OJG40349.1	RV02_GL003181	RV02_GL002437	Hypothetical protein.	Phi13 family phage major tail protein.	0.728
OJG38027.1	OJG40899.1	RV02_GL003181	RV02_GL001753	Hypothetical protein.	Phage tail tape measure protein, TP901 family, core region.	0.562
OJG38027.1	OJG41046.1	RV02_GL003181	RV02_GL001262	Hypothetical protein.	HK97 family phage major capsid protein.	0.750
OJG38027.1	OJG41049.1	RV02_GL003181	RV02_GL001265	Hypothetical protein.	Hypothetical protein.	0.591
OJG40346.1	OJG40349.1	RV02_GL002434	RV02_GL002437	Hypothetical protein.	Phi13 family phage major tail protein.	0.713
OJG40346.1	OJG41049.1	RV02_GL002434	RV02_GL001265	Hypothetical protein.	Hypothetical protein.	0.507
OJG40348.1	OJG40349.1	RV02_GL002436	RV02_GL002437	Hypothetical protein.	Phi13 family phage major tail protein.	0.725
OJG40348.1	OJG40350.1	RV02_GL002436	RV02_GL002438	Hypothetical protein.	Hypothetical protein.	0.730
OJG40348.1	OJG40351.1	RV02_GL002436	RV02_GL002439	Hypothetical protein.	Hypothetical protein.	0.723
OJG40348.1	OJG40352.1	RV02_GL002436	RV02_GL002440	Hypothetical protein.	Hypothetical protein.	0.605
OJG40348.1	OJG40353.1	RV02_GL002436	RV02_GL002441	Hypothetical protein.	Hypothetical protein.	0.584
OJG40349.1	OJG38027.1	RV02_GL002437	RV02_GL003181	Phi13 family phage major tail protein.	Hypothetical protein.	0.728
OJG40349.1	OJG40346.1	RV02_GL002437	RV02_GL002434	Phi13 family phage major tail protein.	Hypothetical protein.	0.713
OJG40349.1	OJG40348.1	RV02_GL002437	RV02_GL002436	Phi13 family phage major tail protein.	Hypothetical protein.	0.725
OJG40349.1	OJG40350.1	RV02_GL002437	RV02_GL002438	Phi13 family phage major tail protein.	Hypothetical protein.	0.804
OJG40349.1	OJG40351.1	RV02_GL002437	RV02_GL002439	Phi13 family phage major tail protein.	Hypothetical protein.	0.787
OJG40349.1	OJG40352.1	RV02_GL002437	RV02_GL002440	Phi13 family phage major tail protein.	Hypothetical protein.	0.646
OJG40349.1	OJG40353.1	RV02_GL002437	RV02_GL002441	Phi13 family phage major tail protein.	Hypothetical protein.	0.646
OJG40349.1	OJG40899.1	RV02_GL002437	RV02_GL001753	Phi13 family phage major tail protein.	Phage tail tape measure protein, TP901 family, core region.	0.621
OJG40349.1	OJG41046.1	RV02_GL002437	RV02_GL001262	Phi13 family phage major tail protein.	HK97 family phage major capsid protein.	0.781