Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
OJG40709.1 | OJG40805.1 | RV02_GL001888 | RV02_GL001778 | Hypothetical protein. | Hypothetical protein; Belongs to the UPF0356 family. | 0.620 |
OJG40709.1 | OJG42341.1 | RV02_GL001888 | RV02_GL003825 | Hypothetical protein. | Hypothetical protein; Belongs to the UPF0223 family. | 0.534 |
OJG40709.1 | OJG44399.1 | RV02_GL001888 | RV02_GL000005 | Hypothetical protein. | Nucleic acid-binding protein. | 0.577 |
OJG40709.1 | ezrA | RV02_GL001888 | RV02_GL001767 | Hypothetical protein. | Septation ring formation regulator EzrA; Negative regulator of FtsZ ring formation; modulates the frequency and position of FtsZ ring formation. Inhibits FtsZ ring formation at polar sites. Interacts either with FtsZ or with one of its binding partners to promote depolymerization; Belongs to the EzrA family. | 0.468 |
OJG40709.1 | gpsB | RV02_GL001888 | RV02_GL003719 | Hypothetical protein. | DivIVA domain-containing protein; Divisome component that associates with the complex late in its assembly, after the Z-ring is formed, and is dependent on DivIC and PBP2B for its recruitment to the divisome. Together with EzrA, is a key component of the system that regulates PBP1 localization during cell cycle progression. Its main role could be the removal of PBP1 from the cell pole after pole maturation is completed. Also contributes to the recruitment of PBP1 to the division complex. Not essential for septum formation. | 0.632 |
OJG40805.1 | OJG40709.1 | RV02_GL001778 | RV02_GL001888 | Hypothetical protein; Belongs to the UPF0356 family. | Hypothetical protein. | 0.620 |
OJG40805.1 | OJG42341.1 | RV02_GL001778 | RV02_GL003825 | Hypothetical protein; Belongs to the UPF0356 family. | Hypothetical protein; Belongs to the UPF0223 family. | 0.740 |
OJG40805.1 | ezrA | RV02_GL001778 | RV02_GL001767 | Hypothetical protein; Belongs to the UPF0356 family. | Septation ring formation regulator EzrA; Negative regulator of FtsZ ring formation; modulates the frequency and position of FtsZ ring formation. Inhibits FtsZ ring formation at polar sites. Interacts either with FtsZ or with one of its binding partners to promote depolymerization; Belongs to the EzrA family. | 0.607 |
OJG42139.1 | OJG42341.1 | RV02_GL004045 | RV02_GL003825 | RsmE family RNA methyltransferase; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | Hypothetical protein; Belongs to the UPF0223 family. | 0.603 |
OJG42340.1 | OJG42341.1 | RV02_GL003824 | RV02_GL003825 | Hypothetical protein. | Hypothetical protein; Belongs to the UPF0223 family. | 0.920 |
OJG42340.1 | OJG42343.1 | RV02_GL003824 | RV02_GL003827 | Hypothetical protein. | Dihydrolipoamide S-succinyltransferase. | 0.594 |
OJG42340.1 | lpdA-3 | RV02_GL003824 | RV02_GL003826 | Hypothetical protein. | Dihydrolipoyl dehydrogenase. | 0.627 |
OJG42340.1 | typA | RV02_GL003824 | RV02_GL003823 | Hypothetical protein. | GTP-binding protein TypA/BipA. | 0.853 |
OJG42341.1 | OJG40709.1 | RV02_GL003825 | RV02_GL001888 | Hypothetical protein; Belongs to the UPF0223 family. | Hypothetical protein. | 0.534 |
OJG42341.1 | OJG40805.1 | RV02_GL003825 | RV02_GL001778 | Hypothetical protein; Belongs to the UPF0223 family. | Hypothetical protein; Belongs to the UPF0356 family. | 0.740 |
OJG42341.1 | OJG42139.1 | RV02_GL003825 | RV02_GL004045 | Hypothetical protein; Belongs to the UPF0223 family. | RsmE family RNA methyltransferase; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.603 |
OJG42341.1 | OJG42340.1 | RV02_GL003825 | RV02_GL003824 | Hypothetical protein; Belongs to the UPF0223 family. | Hypothetical protein. | 0.920 |
OJG42341.1 | OJG42343.1 | RV02_GL003825 | RV02_GL003827 | Hypothetical protein; Belongs to the UPF0223 family. | Dihydrolipoamide S-succinyltransferase. | 0.520 |
OJG42341.1 | OJG44399.1 | RV02_GL003825 | RV02_GL000005 | Hypothetical protein; Belongs to the UPF0223 family. | Nucleic acid-binding protein. | 0.569 |
OJG42341.1 | ezrA | RV02_GL003825 | RV02_GL001767 | Hypothetical protein; Belongs to the UPF0223 family. | Septation ring formation regulator EzrA; Negative regulator of FtsZ ring formation; modulates the frequency and position of FtsZ ring formation. Inhibits FtsZ ring formation at polar sites. Interacts either with FtsZ or with one of its binding partners to promote depolymerization; Belongs to the EzrA family. | 0.532 |
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