Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OJG69399.1Hypothetical protein. (88 aa)    
Predicted Functional Partners:
OJG69400.1
glycine/betaine/sarcosine/D-proline reductase family selenoprotein B.
 
     0.967
OJG69398.1
Hypothetical protein.
 
   
 0.952
OJG76452.1
Hypothetical protein.
 
     0.848
OJG76557.1
Proline reductase.
 
     0.799
OJG76451.1
Proline reductase.
 
     0.799
OJG76689.1
Hypothetical protein.
 
     0.798
OJG76453.1
Hypothetical protein.
 
     0.798
OJG76690.1
Hypothetical protein.
 
     0.794
OJG69700.1
Hypothetical protein.
 
   
 0.774
OJG76455.1
Hypothetical protein.
 
     0.773
Your Current Organism:
Enterococcus pallens
NCBI taxonomy Id: 160454
Other names: ATCC BAA-351, CCUG 45554, E. pallens, Enterococcus pallens Tyrrell et al. 2002, NBRC 100697, strain PQ2
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