Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OJG78940.1Hypothetical protein. (134 aa)    
Predicted Functional Partners:
OJG78752.1
Hypothetical protein.
 
    0.809
OJG79348.1
Hypothetical protein.
 
     0.760
OJG78959.1
Hypothetical protein.
 
   
 0.760
OJG79560.1
Hypothetical protein.
 
     0.754
OJG78233.1
Hypothetical protein.
  
     0.741
OJG78242.1
Hypothetical protein.
 
     0.736
OJG78188.1
Hypothetical protein.
 
     0.731
OJG79738.1
Hypothetical protein.
 
   
 0.730
OJG82059.1
Hypothetical protein.
 
    0.725
OJG81977.1
Hypothetical protein.
 
   
 0.718
Your Current Organism:
Enterococcus pallens
NCBI taxonomy Id: 160454
Other names: ATCC BAA-351, CCUG 45554, E. pallens, Enterococcus pallens Tyrrell et al. 2002, NBRC 100697, strain PQ2
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