Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
OJG72962.1 | OJG77077.1 | RV10_GL004895 | RV10_GL003023 | Hypothetical protein. | Hypothetical protein. | 0.845 |
OJG72962.1 | OJG77429.1 | RV10_GL004895 | RV10_GL002539 | Hypothetical protein. | Aliphatic sulfonates family ABC transporter, substrate-binding protein. | 0.727 |
OJG72962.1 | OJG77444.1 | RV10_GL004895 | RV10_GL002418 | Hypothetical protein. | Hypothetical protein. | 0.723 |
OJG72962.1 | OJG77445.1 | RV10_GL004895 | RV10_GL002419 | Hypothetical protein. | Hypothetical protein. | 0.728 |
OJG72962.1 | OJG81027.1 | RV10_GL004895 | RV10_GL004026 | Hypothetical protein. | Flavin reductase. | 0.705 |
OJG72962.1 | dltA | RV10_GL004895 | RV10_GL000882 | Hypothetical protein. | D-alanine-poly(phosphoribitol) ligase, subunit 1; Catalyzes the first step in the D-alanylation of lipoteichoic acid (LTA), the activation of D-alanine and its transfer onto the D- alanyl carrier protein (Dcp) DltC. In an ATP-dependent two-step reaction, forms a high energy D-alanyl-AMP intermediate, followed by transfer of the D-alanyl residue as a thiol ester to the phosphopantheinyl prosthetic group of the Dcp. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall. Belongs to [...] | 0.660 |
OJG72962.1 | phnC | RV10_GL004895 | RV10_GL000779 | Hypothetical protein. | Phosphonate ABC transporter, ATP-binding protein; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family. | 0.728 |
OJG72962.1 | rnfB | RV10_GL004895 | RV10_GL003578 | Hypothetical protein. | Electron transport complex, rnfabcdge type, B subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | 0.698 |
OJG77076.1 | OJG77077.1 | RV10_GL003022 | RV10_GL003023 | Glucose uptake protein. | Hypothetical protein. | 0.773 |
OJG77077.1 | OJG72962.1 | RV10_GL003023 | RV10_GL004895 | Hypothetical protein. | Hypothetical protein. | 0.845 |
OJG77077.1 | OJG77076.1 | RV10_GL003023 | RV10_GL003022 | Hypothetical protein. | Glucose uptake protein. | 0.773 |
OJG77077.1 | OJG77429.1 | RV10_GL003023 | RV10_GL002539 | Hypothetical protein. | Aliphatic sulfonates family ABC transporter, substrate-binding protein. | 0.875 |
OJG77077.1 | OJG77444.1 | RV10_GL003023 | RV10_GL002418 | Hypothetical protein. | Hypothetical protein. | 0.867 |
OJG77077.1 | OJG77445.1 | RV10_GL003023 | RV10_GL002419 | Hypothetical protein. | Hypothetical protein. | 0.848 |
OJG77077.1 | OJG79347.1 | RV10_GL003023 | RV10_GL000849 | Hypothetical protein. | Hypothetical protein. | 0.845 |
OJG77077.1 | OJG81027.1 | RV10_GL003023 | RV10_GL004026 | Hypothetical protein. | Flavin reductase. | 0.915 |
OJG77077.1 | dltA | RV10_GL003023 | RV10_GL000882 | Hypothetical protein. | D-alanine-poly(phosphoribitol) ligase, subunit 1; Catalyzes the first step in the D-alanylation of lipoteichoic acid (LTA), the activation of D-alanine and its transfer onto the D- alanyl carrier protein (Dcp) DltC. In an ATP-dependent two-step reaction, forms a high energy D-alanyl-AMP intermediate, followed by transfer of the D-alanyl residue as a thiol ester to the phosphopantheinyl prosthetic group of the Dcp. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall. Belongs to [...] | 0.876 |
OJG77077.1 | phnC | RV10_GL003023 | RV10_GL000779 | Hypothetical protein. | Phosphonate ABC transporter, ATP-binding protein; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family. | 0.848 |
OJG77077.1 | rnfB | RV10_GL003023 | RV10_GL003578 | Hypothetical protein. | Electron transport complex, rnfabcdge type, B subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | 0.798 |
OJG77429.1 | OJG72962.1 | RV10_GL002539 | RV10_GL004895 | Aliphatic sulfonates family ABC transporter, substrate-binding protein. | Hypothetical protein. | 0.727 |
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