Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
OJG75075.1 | OJG76098.1 | RV10_GL004526 | RV10_GL004243 | Signal peptidase I; Belongs to the peptidase S26 family. | Hypothetical protein; Belongs to the peptidase S26 family. | 0.737 |
OJG75075.1 | OJG80988.1 | RV10_GL004526 | RV10_GL003987 | Signal peptidase I; Belongs to the peptidase S26 family. | RNA polymerase sigma-54 factor. | 0.811 |
OJG75075.1 | OJG81296.1 | RV10_GL004526 | RV10_GL003424 | Signal peptidase I; Belongs to the peptidase S26 family. | Phosphate transport system regulatory protein PhoU; Plays a role in the regulation of phosphate uptake. | 0.759 |
OJG75075.1 | alaS | RV10_GL004526 | RV10_GL002744 | Signal peptidase I; Belongs to the peptidase S26 family. | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.750 |
OJG75075.1 | lepA | RV10_GL004526 | RV10_GL002870 | Signal peptidase I; Belongs to the peptidase S26 family. | Elongation factor 4; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner. | 0.831 |
OJG75075.1 | rnc | RV10_GL004526 | RV10_GL001228 | Signal peptidase I; Belongs to the peptidase S26 family. | Ribonuclease 3; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.637 |
OJG75075.1 | rnhB | RV10_GL004526 | RV10_GL000400 | Signal peptidase I; Belongs to the peptidase S26 family. | Hypothetical protein; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.722 |
OJG75075.1 | rpmF | RV10_GL004526 | RV10_GL002598 | Signal peptidase I; Belongs to the peptidase S26 family. | 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. | 0.574 |
OJG76098.1 | OJG75075.1 | RV10_GL004243 | RV10_GL004526 | Hypothetical protein; Belongs to the peptidase S26 family. | Signal peptidase I; Belongs to the peptidase S26 family. | 0.737 |
OJG76098.1 | OJG76099.1 | RV10_GL004243 | RV10_GL004244 | Hypothetical protein; Belongs to the peptidase S26 family. | Hypothetical protein. | 0.621 |
OJG76098.1 | OJG76100.1 | RV10_GL004243 | RV10_GL004245 | Hypothetical protein; Belongs to the peptidase S26 family. | Hypothetical protein. | 0.621 |
OJG76098.1 | OJG80988.1 | RV10_GL004243 | RV10_GL003987 | Hypothetical protein; Belongs to the peptidase S26 family. | RNA polymerase sigma-54 factor. | 0.643 |
OJG76098.1 | OJG81296.1 | RV10_GL004243 | RV10_GL003424 | Hypothetical protein; Belongs to the peptidase S26 family. | Phosphate transport system regulatory protein PhoU; Plays a role in the regulation of phosphate uptake. | 0.570 |
OJG76098.1 | alaS | RV10_GL004243 | RV10_GL002744 | Hypothetical protein; Belongs to the peptidase S26 family. | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.596 |
OJG76098.1 | lepA | RV10_GL004243 | RV10_GL002870 | Hypothetical protein; Belongs to the peptidase S26 family. | Elongation factor 4; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner. | 0.664 |
OJG76098.1 | rnc | RV10_GL004243 | RV10_GL001228 | Hypothetical protein; Belongs to the peptidase S26 family. | Ribonuclease 3; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.602 |
OJG76098.1 | rnhB | RV10_GL004243 | RV10_GL000400 | Hypothetical protein; Belongs to the peptidase S26 family. | Hypothetical protein; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.656 |
OJG76098.1 | rpmF | RV10_GL004243 | RV10_GL002598 | Hypothetical protein; Belongs to the peptidase S26 family. | 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. | 0.564 |
OJG76099.1 | OJG76098.1 | RV10_GL004244 | RV10_GL004243 | Hypothetical protein. | Hypothetical protein; Belongs to the peptidase S26 family. | 0.621 |
OJG76099.1 | OJG76100.1 | RV10_GL004244 | RV10_GL004245 | Hypothetical protein. | Hypothetical protein. | 0.792 |
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