STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oprPPorin P; Function experimentally demonstrated in the studied genus; transporter; Biologicalprocesses : Circulate. (429 aa)    
Predicted Functional Partners:
oprD
Basic-amino-acid specific porin OprD; Function experimentally demonstrated in the studied genus; transporter; Transportandbindingproteins : Porins.
  
   
 0.791
oprF
Outer membrane porin F.
  
   
 0.682
PP_2662
Homologs of previously reported genes of unknown function.
 
    0.678
oprH
Outer membrane protein H1.
      
 0.648
cmpX
CmpX protein.
  
   
 0.620
cmaX
CmaX protein.
   
  
 0.594
opdC
Histidine-specific outer membrane porin D; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter; Transportandbindingproteins : Porins.
      
 0.517
lptD
LPS-assembly protein LptD; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
  
     0.495
PP_0887
Sensor histidine kinase.
  
     0.490
PP_1357
Homologs of previously reported genes of unknown function; Unknown function.
  
     0.457
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.