Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_0050Homologs of previously reported genes of unknown function. (135 aa)    
Predicted Functional Partners:
oprB-I
Carbohydrate-selective porin; Function experimentally demonstrated in the studied strain; transporter.
  
     0.649
oprB-II
Carbohydrate-selective porin; Function experimentally demonstrated in the studied strain; transporter.
  
     0.649
PP_2360
Putative type 1 pili subunit CsuA/B protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; cell process.
  
     0.571
PP_0806
Putative Surface adhesion protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
     0.562
PP_3216
Putative cysteine dioxygenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Unknownfunction : Enzymes of unknown specificity.
  
     0.562
PP_0051
Putative sigma-54 dependent transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
    0.501
PP_1269
Universal stress protein family.
  
     0.490
PP_4703
Homologs of previously reported genes of unknown function.
  
     0.444
PP_5529
Putative epimerase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.441
PP_1724
Putative ABC-type 2-aminoethylphosphonate transporter permease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Transport and binding proteins.
  
    0.431
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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