Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PP_0052Beta-lactamase domain protein, putative hydrolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (294 aa)    
Predicted Functional Partners:
PP_0053
Putative sulfide:quinone oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 0.988
PP_0054
Homologs of previously reported genes of unknown function.
 
  
 0.967
PP_0051
Putative sigma-54 dependent transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
     
 0.878
PP_4236
Putative Thiol:disulfide interchange protein dsbE; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 
 
 0.797
PP_2772
Putative Monooxygenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 
 0.768
ssuE
NAD(P)H-dependent FMN reductase subunit; Probably forms a two-component reduced flavin mononucleotide- dependent monooxygenase by binding to SsuD. Required for growth on aliphatic sulfonates or methionine but not arylsulfonates (By similarity); Belongs to the SsuE family.
      
 0.750
PP_2773
Homologs of previously reported genes of unknown function.
      
 0.750
PP_4238
Homologs of previously reported genes of unknown function.
      
 0.750
PP_2765
Putative Sulfonate monooxygenase MsuD; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
      
 0.744
PP_3295
YeeE/YedE family protein.
 
     0.723
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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