Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| PP_1165 | PP_2744 | PP_1165 | PP_2744 | Homologs of previously reported genes of unknown function. | Ribose-phosphate pyrophosphokinase family protein. | 0.851 |
| PP_1165 | asnB | PP_1165 | PP_1750 | Homologs of previously reported genes of unknown function. | Asparagine synthetase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. | 0.481 |
| PP_1165 | def-I | PP_1165 | PP_0068 | Homologs of previously reported genes of unknown function. | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.839 |
| PP_1165 | prs | PP_1165 | PP_0722 | Homologs of previously reported genes of unknown function. | Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. | 0.470 |
| PP_2744 | PP_1165 | PP_2744 | PP_1165 | Ribose-phosphate pyrophosphokinase family protein. | Homologs of previously reported genes of unknown function. | 0.851 |
| PP_2744 | asnB | PP_2744 | PP_1750 | Ribose-phosphate pyrophosphokinase family protein. | Asparagine synthetase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. | 0.854 |
| PP_2744 | def-I | PP_2744 | PP_0068 | Ribose-phosphate pyrophosphokinase family protein. | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.939 |
| PP_2744 | prs | PP_2744 | PP_0722 | Ribose-phosphate pyrophosphokinase family protein. | Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. | 0.925 |
| PP_2744 | rplI | PP_2744 | PP_4874 | Ribose-phosphate pyrophosphokinase family protein. | 50S ribosomal protein L9; Binds to the 23S rRNA. | 0.490 |
| PP_2744 | rplT | PP_2744 | PP_2468 | Ribose-phosphate pyrophosphokinase family protein. | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.450 |
| PP_2744 | rplU | PP_2744 | PP_0688 | Ribose-phosphate pyrophosphokinase family protein. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.544 |
| PP_2744 | rpsJ | PP_2744 | PP_0453 | Ribose-phosphate pyrophosphokinase family protein. | 30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.621 |
| asnB | PP_1165 | PP_1750 | PP_1165 | Asparagine synthetase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. | Homologs of previously reported genes of unknown function. | 0.481 |
| asnB | PP_2744 | PP_1750 | PP_2744 | Asparagine synthetase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. | Ribose-phosphate pyrophosphokinase family protein. | 0.854 |
| asnB | def-I | PP_1750 | PP_0068 | Asparagine synthetase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.834 |
| asnB | prs | PP_1750 | PP_0722 | Asparagine synthetase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. | Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. | 0.501 |
| def-I | PP_1165 | PP_0068 | PP_1165 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Homologs of previously reported genes of unknown function. | 0.839 |
| def-I | PP_2744 | PP_0068 | PP_2744 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Ribose-phosphate pyrophosphokinase family protein. | 0.939 |
| def-I | asnB | PP_0068 | PP_1750 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Asparagine synthetase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. | 0.834 |
| def-I | fmt | PP_0068 | PP_0067 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.989 |
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