STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_0075Putative choline sulfate transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (521 aa)    
Predicted Functional Partners:
PP_3398
Putative Curli fiber surface-exposed nucleator CsgB; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
      
 0.930
cynT
Carbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.
 
  
 0.905
PP_0101
Putative sulfate transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
   
0.537
betC
Choline-sulfatase; Function experimentally demonstrated in the studied strain; enzyme; Central intermediary metabolism.
     
 0.526
PP_4112
Sulphate transporter.
 
   
0.521
nuoM
NADH:ubiquinone oxidoreductase, membrane subunit M; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Energymetabolism : Aerobic.
  
 
 0.516
petB
Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
   
 
 0.508
PP_0718
Sulfate transporter.
  
   
0.505
PP_0076
Putative choline betaine-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
       0.488
PP_1407
Sulfate transporter.
  
   
0.485
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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