STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_0086Homologs of previously reported genes of unknown function. (71 aa)    
Predicted Functional Partners:
PP_0087
Homologs of previously reported genes of unknown function.
  
    0.648
PP_0085
Homologs of previously reported genes of unknown function.
  
    0.645
PP_0135
Homologs of previously reported genes of unknown function; Unknown function.
   
  
 0.578
PP_1455
Homologs of previously reported genes of unknown function.
      
 0.575
PP_5362
Homologs of previously reported genes of unknown function.
      
 0.574
PP_2419
Conserved membrane protein of unknown function DUF1624 family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Unknown function.
      
 0.556
PP_2105
Homologs of previously reported genes of unknown function.
   
    0.527
csbD
Stress response protein; Function of homologous gene experimentally demonstrated in an other organism; factor; Cellularprocesses : Adaptations to atypical conditions; Belongs to the UPF0337 (CsbD) family.
   
    0.526
PP_4704
Homologs of previously reported genes of unknown function.
  
    0.493
trpI
HTH-type transcriptional regulator TrpI; Belongs to the LysR transcriptional regulatory family.
       0.488
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.