STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_0086Homologs of previously reported genes of unknown function. (71 aa)    
Predicted Functional Partners:
PP_0085
Homologs of previously reported genes of unknown function.
  
    0.639
PP_0087
Homologs of previously reported genes of unknown function.
  
    0.635
csbD
Stress response protein; Function of homologous gene experimentally demonstrated in an other organism; factor; Cellularprocesses : Adaptations to atypical conditions; Belongs to the UPF0337 (CsbD) family.
   
    0.553
PP_2059
UPF0337 protein PP_2059; Belongs to the UPF0337 (CsbD) family.
   
    0.504
PP_4704
Homologs of previously reported genes of unknown function.
  
    0.483
PP_2105
Homologs of previously reported genes of unknown function.
   
    0.477
PP_4856
Ferritin, Dps family protein.
   
    0.457
yhjG
Uncharacterized protein YhjG; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component.
   
    0.457
wbpL
Glycosyl transferase WbpL.
  
    0.421
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.