Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_0128Homologs of previously reported genes of unknown function. (284 aa)    
Predicted Functional Partners:
PP_0129
GGDEF domain protein.
  
    0.870
dsbA
Thiol:disulfide interchange protein; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Proteinfate : Protein folding and stabilization.
       0.855
amiD
1,6-anhydro-N-acetylmuramyl-L-alanine amidase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.734
PP_5090
Putative cell division protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
  
    0.709
PP_1236
Putative Glycine cleavage system transcriptional repressor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
     0.669
PP_1368
Putative membrane protein containing a glycosyltransferase domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Unknownfunction : Enzymes of unknown specificity.
 
  
 0.636
PP_0131
Putative membrane-anchored phosphodiesterase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.633
cc
Cytochrome c4.
       0.557
PP_4813
PAP2 family protein/DedA family protein.
 
     0.541
PP_5202
Putative cell division protein; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division.
  
    0.525
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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