Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PP_0129GGDEF domain protein. (645 aa)    
Predicted Functional Partners:
PP_0131
Putative membrane-anchored phosphodiesterase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
   
 0.922
PP_0128
Homologs of previously reported genes of unknown function.
  
    0.870
PP_3435
Homologs of previously reported genes of unknown function.
 
  
 0.838
PP_3672
Homologs of previously reported genes of unknown function.
 
  
 0.835
PP_1718
Putative diguanylate phosphodiesterase containing EAL domain; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Unknownfunction : Enzymes of unknown specificity.
 
  
 0.826
dsbA
Thiol:disulfide interchange protein; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Proteinfate : Protein folding and stabilization.
       0.812
bcsA
Cellulose synthase and translocator subunit; Catalytic subunit of cellulose synthase. It polymerizes uridine 5'-diphosphate glucose to cellulose.
  
  
 0.793
amiD
1,6-anhydro-N-acetylmuramyl-L-alanine amidase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
    0.767
bcsG
Putative endoglucanase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Cellenvelope : Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides.
      
 0.654
PP_4959
Diguanylate cyclase; Function of strongly homologous gene; enzyme.
 
 
0.601
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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