STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amiD1,6-anhydro-N-acetylmuramyl-L-alanine amidase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (262 aa)    
Predicted Functional Partners:
rlpA-2
Putative Lipoprotein; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
  
   
 0.945
nagZ
beta-N-acetylglucosaminidase; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily.
 
  
 0.652
PP_0129
GGDEF domain protein.
  
    0.637
PP_4799
Putative Muramoyltetrapeptide carboxypeptidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
  
 0.612
PP_0128
Homologs of previously reported genes of unknown function.
  
    0.579
dsbA
Thiol:disulfide interchange protein; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Proteinfate : Protein folding and stabilization.
  
    0.566
PP_0131
Putative membrane-anchored phosphodiesterase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
    0.534
ampD
N-acetyl-anhydromuramyl-L-alanine-amidase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Regulatory functions.
  
  
0.462
PP_2238
Putative metallopeptidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Proteinfate : Degradation of proteins, peptides, and glycopeptides.
  
    0.439
amiC
N-acetylmuramoyl-L-alanine amidase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Cellenvelope : Biosynthesis and degradation of murein sacculus and peptidoglycan.
  
  
 0.404
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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