STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_0138Homologs of previously reported genes of unknown function. (409 aa)    
Predicted Functional Partners:
gltP
Glutamate/aspartate-proton DAACS transporter; Catalyzes the proton-dependent transport of glutamate and aspartate; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. GltP subfamily.
       0.720
pbpG
Periplasmic murein D-alanyl-D-alanine endopeptidase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Cellenvelope : Biosynthesis and degradation of murein sacculus and peptidoglycan; Belongs to the peptidase S11 family.
  
  
 0.675
dacA
D-alanyl-D-alanine carboxypeptidase; Function of strongly homologous gene; enzyme; Belongs to the peptidase S11 family.
  
  
 0.675
ycgB
Putative type IV piliation protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; cell process; Unknown function.
  
  
 0.647
PP_1268
Putative HtrA suppressor protein sohA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
     
 0.590
dapB
4-hydroxy-tetrahydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate.
     
 0.557
PP_4799
Putative Muramoyltetrapeptide carboxypeptidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
     0.546
PP_4176
Putative 5-oxo-L-prolinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.532
amiC
N-acetylmuramoyl-L-alanine amidase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Cellenvelope : Biosynthesis and degradation of murein sacculus and peptidoglycan.
 
  
 0.511
PP_0128
Homologs of previously reported genes of unknown function.
       0.488
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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