Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PP_0139Putative Lipoprotein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (211 aa)    
Predicted Functional Partners:
PP_0140
Homologs of previously reported genes of unknown function.
 
   0.992
PP_0141
Putative ABC transporter, ATP-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
    0.968
PP_0142
Putative ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.959
PP_0143
Homologs of previously reported genes of unknown function.
       0.729
mlaD
Phospholipid ABC transporter binding protein; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transport and binding proteins.
  
   0.549
PP_1309
Homologs of previously reported genes of unknown function.
       0.488
PP_0144
Metalloprotease, insulinase family.
       0.480
mlaF
Phospholipid ABC transporter ATP-binding subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transport and binding proteins.
  
    0.463
flgC
Flagellar basal-body rod protein FlgC; Function of homologous gene experimentally demonstrated in an other organism; structure; Cellenvelope : Surface structures; Belongs to the flagella basal body rod proteins family.
    
   0.422
PP_1310
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.410
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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