Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PP_0165GGDEF domain protein. (648 aa)    
Predicted Functional Partners:
PP_0164
Homologs of previously reported genes of unknown function; Unknown function.
 
 
 0.999
PP_1779
Lipopolysaccharide ABC export system, ATP-binding protein.
   
  
 0.897
PP_3413
Sensor histidine kinase/response regulator.
 
  
 0.873
PP_0216
Putative sensory box/GGDEF family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Signal transduction.
 
 
 0.864
PP_2557
Sensory box protein.
 
 
 0.863
dusB
tRNA-dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily.
     
 0.853
yijP
Putative phosphoethanolamine transferase CptA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
      
 0.851
gacS
Sensor protein GacS.
 
  
 0.835
PP_1155
YaiC/YhcK/ArdA family protein.
 
  
 0.823
PP_3242
GGDEF domain protein.
 
 
 0.819
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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