STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_0166HlyD family secretion protein. (458 aa)    
Predicted Functional Partners:
paxB
Toxin secretion ATP-binding protein.
 0.997
tolC
Agglutination protein.
 
 0.986
PP_0168
Putative surface adhesion protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component.
 
 
 0.939
PP_4333
CheW domain protein.
      
 0.929
PP_0804
Protein secretion ABC efflux system, permease and ATP-binding protein.
 
 0.903
PP_4396
Homologs of previously reported genes of unknown function.
      
 0.880
PP_0805
Outer membrane efflux protein.
 
 0.842
upp
Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.
  
  
 0.840
PP_0164
Homologs of previously reported genes of unknown function; Unknown function.
 
  
 0.792
cyaB
Cyclolysin secretion/processing ATP-binding protein CyaB.
 
 0.792
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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