STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_0168Putative surface adhesion protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component. (8682 aa)    
Predicted Functional Partners:
paxB
Toxin secretion ATP-binding protein.
 
 
 0.963
tolC
Agglutination protein.
 
 
 0.953
PP_0166
HlyD family secretion protein.
 
 
 0.939
PP_5431
Homologs of previously reported genes of unknown function; Unknown function.
 
     0.800
PP_0693
Homologs of previously reported genes of unknown function.
 
     0.664
PP_2566
Conserved protein of unknown function containing Leucine-rich repeat domain; Homologs of previously reported genes of unknown function; Unknown function.
 
     0.650
PP_0804
Protein secretion ABC efflux system, permease and ATP-binding protein.
 
  
 0.644
PP_2565
Putative helicase, UvrD/REP family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; DNA metabolism.
  
     0.627
PP_3399
Minor curlin subunit CsgB, nucleation component of curlin monomers; Function of strongly homologous gene; factor; Cell envelope.
  
     0.593
PP_2394
Leucine-rich repeat domain protein.
 
     0.592
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.