STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_0170ABC transporter, periplasmic binding protein. (339 aa)    
Predicted Functional Partners:
PP_0171
ABC transporter, ATP-binding protein.
 
  
 0.967
PP_0172
ABC transporter, permease protein.
 
  
 0.964
PP_0169
Dioxygenase, TauD/TfdA family.
 
  
 0.949
tauA
Taurine ABC transporter periplasmic binding subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Centralintermediarymetabolism : Sulfur metabolism.
   
  
 0.857
PP_4647
Transcriptional regulator, LuxR family; Function of strongly homologous gene; regulator; Transcription.
   
  
 0.839
PP_4246
Periplasmic binding protein.
   
  
 0.831
rlmG
Ribosomal RNA large subunit methyltransferase G; Specifically methylates the guanine in position 1835 (m2G1835) of 23S rRNA.
   
  
 0.520
PP_3210
ABC transporter, permease protein.
  
  
 0.477
PP_3854
Lysozyme.
  
     0.476
PP_0176
Putative efflux transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
    0.473
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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