PP_0170 protein (Pseudomonas putida KT2440) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PP_0170

ABC transporter, periplasmic binding protein. (339 aa)

Predicted Functional Partners:

PP_0171

0.996

PP_0172

0.996

PP_0169

0.978

ssuB

0.911

tauB-I

0.908

PP_0208

0.890

ssuC

0.890

tauA

0.882

PP_4647

0.881

PP_4246

0.819

Your Current Organism:

Pseudomonas putida KT2440

NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PP_0169	PP_0170	PP_0169	PP_0170	Dioxygenase, TauD/TfdA family.	ABC transporter, periplasmic binding protein.	0.978
PP_0169	PP_0171	PP_0169	PP_0171	Dioxygenase, TauD/TfdA family.	ABC transporter, ATP-binding protein.	0.919
PP_0169	PP_0172	PP_0169	PP_0172	Dioxygenase, TauD/TfdA family.	ABC transporter, permease protein.	0.895
PP_0169	ssuB	PP_0169	PP_0240	Dioxygenase, TauD/TfdA family.	Aliphatic sulfonates import ATP-binding protein SsuB; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system.	0.425
PP_0169	tauA	PP_0169	PP_0233	Dioxygenase, TauD/TfdA family.	Taurine ABC transporter periplasmic binding subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Centralintermediarymetabolism : Sulfur metabolism.	0.824
PP_0170	PP_0169	PP_0170	PP_0169	ABC transporter, periplasmic binding protein.	Dioxygenase, TauD/TfdA family.	0.978
PP_0170	PP_0171	PP_0170	PP_0171	ABC transporter, periplasmic binding protein.	ABC transporter, ATP-binding protein.	0.996
PP_0170	PP_0172	PP_0170	PP_0172	ABC transporter, periplasmic binding protein.	ABC transporter, permease protein.	0.996
PP_0170	PP_0208	PP_0170	PP_0208	ABC transporter, periplasmic binding protein.	Putative Nitrate ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	0.890
PP_0170	PP_4246	PP_0170	PP_4246	ABC transporter, periplasmic binding protein.	Periplasmic binding protein.	0.819
PP_0170	PP_4647	PP_0170	PP_4647	ABC transporter, periplasmic binding protein.	Transcriptional regulator, LuxR family; Function of strongly homologous gene; regulator; Transcription.	0.881
PP_0170	ssuB	PP_0170	PP_0240	ABC transporter, periplasmic binding protein.	Aliphatic sulfonates import ATP-binding protein SsuB; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system.	0.911
PP_0170	ssuC	PP_0170	PP_0239	ABC transporter, periplasmic binding protein.	Aliphatic sulfonate ABC transporter - permease subunit / transport of isethionate; Function of homologous gene experimentally demonstrated in an other organism; transporter; Centralintermediarymetabolism : Sulfur metabolism.	0.890
PP_0170	tauA	PP_0170	PP_0233	ABC transporter, periplasmic binding protein.	Taurine ABC transporter periplasmic binding subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Centralintermediarymetabolism : Sulfur metabolism.	0.882
PP_0170	tauB-I	PP_0170	PP_0209	ABC transporter, periplasmic binding protein.	ATP-binding taurine transporter subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Centralintermediarymetabolism : Sulfur metabolism.	0.908
PP_0171	PP_0169	PP_0171	PP_0169	ABC transporter, ATP-binding protein.	Dioxygenase, TauD/TfdA family.	0.919
PP_0171	PP_0170	PP_0171	PP_0170	ABC transporter, ATP-binding protein.	ABC transporter, periplasmic binding protein.	0.996
PP_0171	PP_0172	PP_0171	PP_0172	ABC transporter, ATP-binding protein.	ABC transporter, permease protein.	0.996
PP_0171	PP_0208	PP_0171	PP_0208	ABC transporter, ATP-binding protein.	Putative Nitrate ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.	0.975
PP_0171	ssuB	PP_0171	PP_0240	ABC transporter, ATP-binding protein.	Aliphatic sulfonates import ATP-binding protein SsuB; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system.	0.926