STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_0174Homologs of previously reported genes of unknown function. (272 aa)    
Predicted Functional Partners:
PP_0863
Homologs of previously reported genes of unknown function.
  
     0.770
PP_4785
Homologs of previously reported genes of unknown function.
  
     0.762
PP_0173
Putative transcriptional factor-related protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
       0.549
PP_0175
Putative transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
    0.530
PP_0177
Homologs of previously reported genes of unknown function.
  
    0.522
PP_0179
Putative efflux transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
   
   0.522
PP_0178
Putative efflux pump; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  
 0.510
PP_0176
Putative efflux transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
       0.490
algK
Alginate biosynthesis protein AlgK; May be involved in the polymerization of mannuronate to alginate.
  
     0.438
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.