Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PP_0181Homologs of previously reported genes of unknown function. (81 aa)    
Predicted Functional Partners:
PP_0182
Homologs of previously reported genes of unknown function.
  
    0.790
PP_0183
Glutathione S-transferase; Function experimentally demonstrated in the studied species; enzyme.
 
     0.684
rlmG
Ribosomal RNA large subunit methyltransferase G; Specifically methylates the guanine in position 1835 (m2G1835) of 23S rRNA.
  
     0.637
PP_2016
Homologs of previously reported genes of unknown function.
  
     0.626
PP_2712
Homologs of previously reported genes of unknown function.
  
     0.574
cyaA
Adenylate cyclase; Function experimentally demonstrated in the studied strain; enzyme.
 
     0.556
PP_0330
Hypothetical protein; Homologs of previously reported genes of unknown function.
  
    0.504
PP_2891
Acetyltransferase, GNAT family.
  
     0.496
PP_0564
Homologs of previously reported genes of unknown function.
  
    0.450
PP_2957
Acetyltransferase, GNAT family.
  
    0.401
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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