STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_0207Putative Nitrate ABC transporter, periplasmic nitrate-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (468 aa)    
Predicted Functional Partners:
PP_0208
Putative Nitrate ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.962
PP_0210
Putative Phycobiliprotein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
    0.944
tauB-I
ATP-binding taurine transporter subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Centralintermediarymetabolism : Sulfur metabolism.
 
  
 0.941
PP_0211
Homologs of previously reported genes of unknown function.
 
    0.930
PP_0206
Ferredoxin, 4Fe-4S.
 
    0.887
PP_0205
Putative Oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
    0.865
PP_0204
Transcriptional regulator, GntR family.
    0.807
ssuC
Aliphatic sulfonate ABC transporter - permease subunit / transport of isethionate; Function of homologous gene experimentally demonstrated in an other organism; transporter; Centralintermediarymetabolism : Sulfur metabolism.
 
  
 0.750
msuE
FMN reductase (NADPH); Function of homologous gene experimentally demonstrated in an other organism; enzyme; Centralintermediarymetabolism : Sulfur metabolism.
 
    0.658
PP_3217
Putative Periplasmic aliphatic sulfonate-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.651
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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