Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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experimentally determined
co-expression
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gene co-occurrence
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[Homology]
Score
gabT4-aminobutyrate aminotransferase; Catalyzes the conversion of 5-aminovalerate to 5- oxopentanoate. (425 aa)    
Predicted Functional Partners:
gabD-I
Succinate-semialdehyde dehydrogenase (NADP+); Catalyzes the conversion of 5-oxopentanoate (glutarate semialdehyde) to glutarate. Involved in L-lysine degradation.
  
 0.993
davA
5-aminopentanamidase; Function experimentally demonstrated in the studied strain; enzyme; Energymetabolism : Amino acids and amines.
 
 
 0.989
gabD-II
Succinate-semialdehyde dehydrogenase (NADP+); Function experimentally demonstrated in the studied species; enzyme; Energymetabolism : Amino acids and amines.
  
 0.961
sad-II
NAD+-dependent succinate semialdehyde dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Biologicalprocesses : Scavenge (Catabolism).
  
 0.960
patD
Medium chain aldehyde dehydrogenase; Function experimentally demonstrated in the studied species; enzyme; Energymetabolism : Amino acids and amines; Belongs to the aldehyde dehydrogenase family.
  
 0.951
PP_2799
Aminotransferase, class III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 
0.941
prr
Gamma-aminobutyraldehyde dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the aldehyde dehydrogenase family.
  
 0.941
sad-I
NAD+-dependent succinate semialdehyde dehydrogenase; Function experimentally demonstrated in the studied genus; enzyme; Biologicalprocesses : Scavenge (Catabolism).
  
 0.929
gbd
Putative 4-hydroxybutyrate dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Fattyacidandphospholipidmetabolism : Degradation.
  
 
 0.914
kauB
4-guanidinobutyraldehyde dehydrogenase; Function experimentally demonstrated in the studied genus; enzyme; Energy metabolism; Belongs to the aldehyde dehydrogenase family.
  
 0.904
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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