STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PP_0224Monooxygenase, DszC family. (413 aa)    
Predicted Functional Partners:
PP_0222
Monooxygenase, DszA family.
    0.909
PP_2765
Putative Sulfonate monooxygenase MsuD; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.822
dmoA-I
Dimethyl-sulfide monooxygenase; Function of strongly homologous gene; enzyme; Central intermediary metabolism.
    0.817
dmoA-II
Dimethyl-sulfide monooxygenase; Function of strongly homologous gene; enzyme; Central intermediary metabolism.
    0.812
ssuD
Alkanesulfonate monooxygenase; Catalyzes the desulfonation of aliphatic sulfonates. Belongs to the SsuD family.
  
    0.747
nuoC
NADH-quinone oxidoreductase subunit C/D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family.
   
 0.741
fadB
enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family.
  
 0.734
PP_3219
Putative Alkansulfonate monooxygenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
  
 0.719
PP_3218
Monooxygenase, NtaA/SnaA/SoxA family.
    0.700
PP_0221
Methionine ABC transporter periplasmic-binding lipoprotein (metQ-like protein); Function of homologous gene experimentally demonstrated in an other organism; transporter; Biologicalprocesses : Explore.
 
    0.678
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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