Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
oprEOuter-membrane porin E; Function experimentally demonstrated in the studied genus; transporter; Transportandbindingproteins : Porins. (444 aa)    
Predicted Functional Partners:
oprH
Outer membrane protein H1.
      
 0.861
oprF
Outer membrane porin F.
      
 0.860
oprC
Outer membrane copper receptor OprC.
      
 0.857
oprG
Outer membrane protein OprG.
   
  
 0.774
PP_0707
Putative membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
      
 0.741
PP_1728
Homologs of previously reported genes of unknown function.
      
 0.741
PP_2741
Homologs of previously reported genes of unknown function.
      
 0.741
mscMB
Mechanosensitive channel of miniconductance; Function of homologous gene experimentally demonstrated in an other organism; transporter; Transport and binding proteins.
      
 0.741
PP_5256
Cyclic nucleotide-binding protein.
      
 0.741
tsaA
Putative peroxiredoxin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
      
 0.655
Your Current Organism:
Pseudomonas putida KT2440
NCBI taxonomy Id: 160488
Other names: P. putida KT2440, Pseudomonas putida (strain KT2440), Pseudomonas putida str. KT2440
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